Plavisto

Untitled Document

Welcome to Plavisto v1.2, Plastid Genome Visualization Tool

Quick start

1. Access the browser - click on the "Browser" tab on top of the page.
2. Navigate within the plastid genome - click "Scroll Left" or "Scroll Right" in the middle of the "Browser" page or click anywhere within the main plot or within the navigation plot below.
3. Change length of the displayed fragment - change value in the "Shown Region Size" box or click on one of the buttons above the box.
4. Select more datasets - click on the "Datasets" tab on top of the page, navigate to the desired category and select one or more dataset.

Organism

Arabidopsis thaliana

Data sources

Palomar VM, Jaksich S, Fujii S, Kucinski J and Wierzbicki AT (2022) High-resolution map of plastid encoded polymerase binding patterns demonstrates a major role of transcription in chloroplast gene expression. Plant Journal 111:1139-1151; [Read article] [Access data in GEO]

Palomar VM, Cho Y, Fujii S, Rothi MH, Jaksich S, Min J-H, Schlachter AN, Wang J, Liu Z, and Wierzbicki AT (2024) Membrane association of active genes organizes the chloroplast nucleoid structure. PNAS 121 (28): e2309244121; [Read article] [Access data in GEO]

Wang J, Palomar VM, Min J-H, and Wierzbicki AT (2024) PAP1 and PAP7 are required for associaiton of plastid-encoded RNA polymerase with DNA. Plant Molecular Biology [Read article in bioRxiv] [Access data in GEO]

Author

Andrzej Wierzbicki [wierzbic@umich.edu] [website]
In collaboration with Miguel Palomar [vpalomar@umich.edu] [website]

Source code

https://github.com/wierzbic/Plavisto/

Plavisto

Wierzbicki Lab Plastid Genome Visualization Tool

Shown Region Size

Number of bins

Zoom

Navigation

Select type of plot #1

Select type of plot #2

Select type of plot #3

Options for plot #1

Options for plot #2

Options for plot #3

Select datasets for Plot #1

Select datasets for Plot #2

Select datasets for Plot #3